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normalized single-cell rnaseq data  (Human Protein Atlas)

 
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    Human Protein Atlas normalized single-cell rnaseq data
    Expression patterns of the ZDHHC enzymes in major human cell types. Heatmaps showing human single-cell <t>RNAseq</t> expression data for the ZDHHC enzymes, downloaded from the Human Protein Atlas. 76 major cell types were identified within 15 cell type clusters. Heatmaps are grouped according to cell type cluster to view relative expression. Heatmap units: TPM. All data available for download on CellPalmSeq.
    Normalized Single Cell Rnaseq Data, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/normalized+single-cell+rnaseq+data/pmc09904442-139-5-1?v=Human+Protein+Atlas
    Average 90 stars, based on 1 article reviews
    normalized single-cell rnaseq data - by Bioz Stars, 2026-07
    90/100 stars

    Images

    1) Product Images from "CellPalmSeq: A curated RNAseq database of palmitoylating and de-palmitoylating enzyme expression in human cell types and laboratory cell lines"

    Article Title: CellPalmSeq: A curated RNAseq database of palmitoylating and de-palmitoylating enzyme expression in human cell types and laboratory cell lines

    Journal: Frontiers in Physiology

    doi: 10.3389/fphys.2023.1110550

    Expression patterns of the ZDHHC enzymes in major human cell types. Heatmaps showing human single-cell RNAseq expression data for the ZDHHC enzymes, downloaded from the Human Protein Atlas. 76 major cell types were identified within 15 cell type clusters. Heatmaps are grouped according to cell type cluster to view relative expression. Heatmap units: TPM. All data available for download on CellPalmSeq.
    Figure Legend Snippet: Expression patterns of the ZDHHC enzymes in major human cell types. Heatmaps showing human single-cell RNAseq expression data for the ZDHHC enzymes, downloaded from the Human Protein Atlas. 76 major cell types were identified within 15 cell type clusters. Heatmaps are grouped according to cell type cluster to view relative expression. Heatmap units: TPM. All data available for download on CellPalmSeq.

    Techniques Used: Expressing

    Expression patterns of the ZDHHC accessory proteins and depalmitoylating enzymes in major human cell types. Heatmaps showing human single-cell RNAseq expression data for the ZDHHC accessory proteins and depalmitoylating enzymes, downloaded from the Human Protein Atlas. 76 major cell types were identified within 15 cell type clusters. Heatmaps are grouped according to cell type cluster to view relative expression. Heatmap units: Transcripts per million (TPM). All data available for download on CellPalmSeq.
    Figure Legend Snippet: Expression patterns of the ZDHHC accessory proteins and depalmitoylating enzymes in major human cell types. Heatmaps showing human single-cell RNAseq expression data for the ZDHHC accessory proteins and depalmitoylating enzymes, downloaded from the Human Protein Atlas. 76 major cell types were identified within 15 cell type clusters. Heatmaps are grouped according to cell type cluster to view relative expression. Heatmap units: Transcripts per million (TPM). All data available for download on CellPalmSeq.

    Techniques Used: Expressing

    Expression of the genes that regulate palmitoylation from CCLE cancer cell lines. (A) Heatmap showing RNAseq expression data for the genes that regulate S -palmitoylation, downloaded from CCLE and averaged according to ‘Primary Disease’. Data are included from 1406 cell lines, averaged into 30 primary disease types. (B) Expression data for selected human cell lines that are commonly used for basic research. All data were extracted from the CCLE dataset, except the H9 cell line which was found only in the CMP dataset, and HEK-293 that was found in the HPA cell line dataset. Heatmap units: Transcripts per million (TPM). All data available for download on CellPalmSeq.
    Figure Legend Snippet: Expression of the genes that regulate palmitoylation from CCLE cancer cell lines. (A) Heatmap showing RNAseq expression data for the genes that regulate S -palmitoylation, downloaded from CCLE and averaged according to ‘Primary Disease’. Data are included from 1406 cell lines, averaged into 30 primary disease types. (B) Expression data for selected human cell lines that are commonly used for basic research. All data were extracted from the CCLE dataset, except the H9 cell line which was found only in the CMP dataset, and HEK-293 that was found in the HPA cell line dataset. Heatmap units: Transcripts per million (TPM). All data available for download on CellPalmSeq.

    Techniques Used: Expressing

    Correlation between RNA and protein expression using cancer cell line data. (A) Diagram illustrating how expression values were converted to z-scores and then correlation values calculated, using CCLE RNAseq and proteomic data. (B) Graph of Spearman correlation values calculated from expression z-scores across available CCLE cell lines, for RNA vs. protein. Number on each bar represents the number of cell lines (in which both RNA and protein were detected) used for each correlation calculation. (C) Heatmap showing enrichments of both RNA and protein across cancer type clusters for selected palmitoylating and depalmitoylating enzymes. Heatmap units: z-score.
    Figure Legend Snippet: Correlation between RNA and protein expression using cancer cell line data. (A) Diagram illustrating how expression values were converted to z-scores and then correlation values calculated, using CCLE RNAseq and proteomic data. (B) Graph of Spearman correlation values calculated from expression z-scores across available CCLE cell lines, for RNA vs. protein. Number on each bar represents the number of cell lines (in which both RNA and protein were detected) used for each correlation calculation. (C) Heatmap showing enrichments of both RNA and protein across cancer type clusters for selected palmitoylating and depalmitoylating enzymes. Heatmap units: z-score.

    Techniques Used: Expressing

    Expression of the genes that regulate S-palmitoylation in selected commonly used non-human cell lines. (A) Heatmap of RNAseq expression data for the genes that regulate S -palmitoylation in control/untreated samples from mouse NIH/3T3 cell line, downloaded from selected datasets on GEO (labelled with GEO accession numbers). N = 1–3 control samples per dataset. Units = Transcripts per million (TPM). (B) As A but for Rat PC12 cell line samples. N = 3 samples per cell dataset. (C) As A but for dog MDCK cell line samples. N = 3–12 samples per dataset.
    Figure Legend Snippet: Expression of the genes that regulate S-palmitoylation in selected commonly used non-human cell lines. (A) Heatmap of RNAseq expression data for the genes that regulate S -palmitoylation in control/untreated samples from mouse NIH/3T3 cell line, downloaded from selected datasets on GEO (labelled with GEO accession numbers). N = 1–3 control samples per dataset. Units = Transcripts per million (TPM). (B) As A but for Rat PC12 cell line samples. N = 3 samples per cell dataset. (C) As A but for dog MDCK cell line samples. N = 3–12 samples per dataset.

    Techniques Used: Expressing, Control



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    normalized single-cell rnaseq data  (Human Protein Atlas)
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    Human Protein Atlas normalized single-cell rnaseq data
    Expression patterns of the ZDHHC enzymes in major human cell types. Heatmaps showing human single-cell <t>RNAseq</t> expression data for the ZDHHC enzymes, downloaded from the Human Protein Atlas. 76 major cell types were identified within 15 cell type clusters. Heatmaps are grouped according to cell type cluster to view relative expression. Heatmap units: TPM. All data available for download on CellPalmSeq.
    Normalized Single Cell Rnaseq Data, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/normalized+single-cell+rnaseq+data/pmc09904442-139-5-1?v=Human+Protein+Atlas
    Average 90 stars, based on 1 article reviews
    normalized single-cell rnaseq data - by Bioz Stars, 2026-07
    90/100 stars
    		  Buy from Supplier

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    Expression patterns of the ZDHHC enzymes in major human cell types. Heatmaps showing human single-cell RNAseq expression data for the ZDHHC enzymes, downloaded from the Human Protein Atlas. 76 major cell types were identified within 15 cell type clusters. Heatmaps are grouped according to cell type cluster to view relative expression. Heatmap units: TPM. All data available for download on CellPalmSeq.

    Journal: Frontiers in Physiology

    Article Title: CellPalmSeq: A curated RNAseq database of palmitoylating and de-palmitoylating enzyme expression in human cell types and laboratory cell lines

    doi: 10.3389/fphys.2023.1110550

    Figure Lengend Snippet: Expression patterns of the ZDHHC enzymes in major human cell types. Heatmaps showing human single-cell RNAseq expression data for the ZDHHC enzymes, downloaded from the Human Protein Atlas. 76 major cell types were identified within 15 cell type clusters. Heatmaps are grouped according to cell type cluster to view relative expression. Heatmap units: TPM. All data available for download on CellPalmSeq.

    Article Snippet: For Human Protein Atlas, normalized single-cell RNAseq data collated from 26 datasets ( www.proteinatlas.org/download/rna_single_cell_type.tsv.zip ) were directly downloaded from ( www.proteinatlas.org/about/download ) and data were extracted (nTPM) for the genes that regulate S -palmitoylation.

    Techniques: Expressing

    Expression patterns of the ZDHHC accessory proteins and depalmitoylating enzymes in major human cell types. Heatmaps showing human single-cell RNAseq expression data for the ZDHHC accessory proteins and depalmitoylating enzymes, downloaded from the Human Protein Atlas. 76 major cell types were identified within 15 cell type clusters. Heatmaps are grouped according to cell type cluster to view relative expression. Heatmap units: Transcripts per million (TPM). All data available for download on CellPalmSeq.

    Journal: Frontiers in Physiology

    Article Title: CellPalmSeq: A curated RNAseq database of palmitoylating and de-palmitoylating enzyme expression in human cell types and laboratory cell lines

    doi: 10.3389/fphys.2023.1110550

    Figure Lengend Snippet: Expression patterns of the ZDHHC accessory proteins and depalmitoylating enzymes in major human cell types. Heatmaps showing human single-cell RNAseq expression data for the ZDHHC accessory proteins and depalmitoylating enzymes, downloaded from the Human Protein Atlas. 76 major cell types were identified within 15 cell type clusters. Heatmaps are grouped according to cell type cluster to view relative expression. Heatmap units: Transcripts per million (TPM). All data available for download on CellPalmSeq.

    Article Snippet: For Human Protein Atlas, normalized single-cell RNAseq data collated from 26 datasets ( www.proteinatlas.org/download/rna_single_cell_type.tsv.zip ) were directly downloaded from ( www.proteinatlas.org/about/download ) and data were extracted (nTPM) for the genes that regulate S -palmitoylation.

    Techniques: Expressing

    Expression of the genes that regulate palmitoylation from CCLE cancer cell lines. (A) Heatmap showing RNAseq expression data for the genes that regulate S -palmitoylation, downloaded from CCLE and averaged according to ‘Primary Disease’. Data are included from 1406 cell lines, averaged into 30 primary disease types. (B) Expression data for selected human cell lines that are commonly used for basic research. All data were extracted from the CCLE dataset, except the H9 cell line which was found only in the CMP dataset, and HEK-293 that was found in the HPA cell line dataset. Heatmap units: Transcripts per million (TPM). All data available for download on CellPalmSeq.

    Journal: Frontiers in Physiology

    Article Title: CellPalmSeq: A curated RNAseq database of palmitoylating and de-palmitoylating enzyme expression in human cell types and laboratory cell lines

    doi: 10.3389/fphys.2023.1110550

    Figure Lengend Snippet: Expression of the genes that regulate palmitoylation from CCLE cancer cell lines. (A) Heatmap showing RNAseq expression data for the genes that regulate S -palmitoylation, downloaded from CCLE and averaged according to ‘Primary Disease’. Data are included from 1406 cell lines, averaged into 30 primary disease types. (B) Expression data for selected human cell lines that are commonly used for basic research. All data were extracted from the CCLE dataset, except the H9 cell line which was found only in the CMP dataset, and HEK-293 that was found in the HPA cell line dataset. Heatmap units: Transcripts per million (TPM). All data available for download on CellPalmSeq.

    Article Snippet: For Human Protein Atlas, normalized single-cell RNAseq data collated from 26 datasets ( www.proteinatlas.org/download/rna_single_cell_type.tsv.zip ) were directly downloaded from ( www.proteinatlas.org/about/download ) and data were extracted (nTPM) for the genes that regulate S -palmitoylation.

    Techniques: Expressing

    Correlation between RNA and protein expression using cancer cell line data. (A) Diagram illustrating how expression values were converted to z-scores and then correlation values calculated, using CCLE RNAseq and proteomic data. (B) Graph of Spearman correlation values calculated from expression z-scores across available CCLE cell lines, for RNA vs. protein. Number on each bar represents the number of cell lines (in which both RNA and protein were detected) used for each correlation calculation. (C) Heatmap showing enrichments of both RNA and protein across cancer type clusters for selected palmitoylating and depalmitoylating enzymes. Heatmap units: z-score.

    Journal: Frontiers in Physiology

    Article Title: CellPalmSeq: A curated RNAseq database of palmitoylating and de-palmitoylating enzyme expression in human cell types and laboratory cell lines

    doi: 10.3389/fphys.2023.1110550

    Figure Lengend Snippet: Correlation between RNA and protein expression using cancer cell line data. (A) Diagram illustrating how expression values were converted to z-scores and then correlation values calculated, using CCLE RNAseq and proteomic data. (B) Graph of Spearman correlation values calculated from expression z-scores across available CCLE cell lines, for RNA vs. protein. Number on each bar represents the number of cell lines (in which both RNA and protein were detected) used for each correlation calculation. (C) Heatmap showing enrichments of both RNA and protein across cancer type clusters for selected palmitoylating and depalmitoylating enzymes. Heatmap units: z-score.

    Article Snippet: For Human Protein Atlas, normalized single-cell RNAseq data collated from 26 datasets ( www.proteinatlas.org/download/rna_single_cell_type.tsv.zip ) were directly downloaded from ( www.proteinatlas.org/about/download ) and data were extracted (nTPM) for the genes that regulate S -palmitoylation.

    Techniques: Expressing

    Expression of the genes that regulate S-palmitoylation in selected commonly used non-human cell lines. (A) Heatmap of RNAseq expression data for the genes that regulate S -palmitoylation in control/untreated samples from mouse NIH/3T3 cell line, downloaded from selected datasets on GEO (labelled with GEO accession numbers). N = 1–3 control samples per dataset. Units = Transcripts per million (TPM). (B) As A but for Rat PC12 cell line samples. N = 3 samples per cell dataset. (C) As A but for dog MDCK cell line samples. N = 3–12 samples per dataset.

    Journal: Frontiers in Physiology

    Article Title: CellPalmSeq: A curated RNAseq database of palmitoylating and de-palmitoylating enzyme expression in human cell types and laboratory cell lines

    doi: 10.3389/fphys.2023.1110550

    Figure Lengend Snippet: Expression of the genes that regulate S-palmitoylation in selected commonly used non-human cell lines. (A) Heatmap of RNAseq expression data for the genes that regulate S -palmitoylation in control/untreated samples from mouse NIH/3T3 cell line, downloaded from selected datasets on GEO (labelled with GEO accession numbers). N = 1–3 control samples per dataset. Units = Transcripts per million (TPM). (B) As A but for Rat PC12 cell line samples. N = 3 samples per cell dataset. (C) As A but for dog MDCK cell line samples. N = 3–12 samples per dataset.

    Article Snippet: For Human Protein Atlas, normalized single-cell RNAseq data collated from 26 datasets ( www.proteinatlas.org/download/rna_single_cell_type.tsv.zip ) were directly downloaded from ( www.proteinatlas.org/about/download ) and data were extracted (nTPM) for the genes that regulate S -palmitoylation.

    Techniques: Expressing, Control